CONFERENCES, SYMPOSIA, & WORKSHOPS
2024
Bridge2AI Spring Face-to-Face All Hands Meeting (May 15, 2024)
Bridge2AI Spring Face-to-Face All Hands Dinner (May 15, 2024)
2023
IMPROVE-Bridge2AI Jamboree Welcome Dinner at Javier’s (Dec 12, 2023)
Recorded Talk: Dr. Trey Ideker presented at the NIDA Center’s 9th Annual Retreat of the P50 Center for Genetic Studies of Drug Abuse in Outbred Rats. A special acknowledgment goes to the Palmer Lab and its members for hosting the event at the University of California San Diego. (Oct 27, 2023)
Schmidt Futures Group Dinner in San Diego (Feb 21, 2023)
2022
Recorded Talk: Trey Ideker speaks with Gill Eapen on Scientific Sense Podcast about AI applications in Biology and Life Sciences.
(Nov 22, 2022)
Recorded Talk: Trey Ideker presents “Building a Mind for Cancer” at the Interpretability in Artificial Intelligence workshop, hosted by the Banff International Research Station. Watch the recorded talk here. (May 5, 2022)
Recorded Talk: Trey Ideker presents “Building The Mind of Cancer” at the University of Buffalo’s 2022 Virtual Quantitative Systems Pharmacology Symposium (Sep 28, 2022)
Recorded Talk: Trey Ideker presents “Building The Mind of Cancer” at the Bioinformatics and Computational Biology Seminar Series at Purdue CS (virtual). Watch the recorded seminar on YouTube. (March 17, 2022)
MuSIC SF Jamboree dinner with Ideker, Lundberg, and Sali Lab (May 22, 2022)
2021
with Drs. Elizabeth Blackburn, Nevan Krogan and Trey Ideker
Video: “Looking Beyond DNA to See Cancer with New Clarity,” a QBI TV live panel discussion with Drs. Nevan Krogan and Trey Ideker. Moderated by Nobel laureate Elizabeth Blackburn, the panel will feature a trio of papers recently published in Science by researchers at UC San Francisco and UC San Diego as part of the Cancer Cell Map Initiative (CCMI).
Date: Nov. 17, 2021
Recorded Talk: Trey Ideker presents “Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells” at the MIT Bioinformatics Seminar, co-sponsored by MIT’s Department of Mathematics and the Theory of Computation group at MIT’s Computer Science and Artificial Intelligence Laboratory (CSAIL).
Recorded Talk: Trey Ideker presents “Deep Learning for Systems Biology” at Inserm workshop 266, “Introduction to Machine Learning from Biology to Health“. Inserm is the Institut national de la santé et de la recherche médicale (National Institute of Health and Medical Research).
Date: Oct. 11, 2021
Recorded Talk: Trey Ideker presents “Mapping cell structure across scales by fusing protein images and interactions“, at the AACR: Artificial Intelligence, Diagnosis, and Imaging 2021 conference.
Recorded in La Jolla, CA. Jan 13, 2021
Video: Trey Ideker presents “Artificially Intelligent Models of Cancer for Diagnosis and Treatment” as part of the UCSD Emeriti Association General Meeting series.
Date: February 10, 2021
Recorded Talk: Trey Ideker presents “Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells” at the Center for Biomedical Data Science at Yale School of Medicine.
2020
Exploring Ethics lecture at the Fleet Science Center
Video: Trey Ideker discusses “Artificially Intelligent Models of Cancer for Precision Diagnosis and Treatment” with the Center for Ethics in Science and Technology’s Exploring Ethics lecture series, at the Fleet Science Center.
A major ambition of artificial intelligence lies in translating patient data to successful therapies. Machine learning models face particular challenges in biomedicine, however, including handling of extreme data heterogeneity and lack of mechanistic insight into predictions. Trey Ideker, PhD argues for “visible” approaches that guide model structure with experimental biology.
Recorded in San Diego. Feb 22, 2020
2019
Drs. Trey Ideker and Nathan Lewis speaking at UCSD/LINK-J Symposium in Tokyo, Japan (Feb 22, 2019)
Samson Fong speaking in the NetBio COSI session at ISMB 2019 in Basel, Switzerland. Presenting “DiseaseScope: Automatic Construction and Interpretation of Hierarchical Disease Models.” Photo by Martina Kutmon. (July 23, 2019)
UCSD/LINK-J Symposium “Systems biology, bioinformatics and big data in medicine and drug development” in Tokyo, Japan
(Feb 22, 2019)
Jisoo Park presenting “DrugCell: A visible neural network to guide precision medicine.” during the poster session at ISMB 2019 in Basel, Switzerland. (July 2019)
Fan Zheng speaking at CSBC West Coast Symposium, held at OSHU (May 2019)
2018
Dr. Ideker and colleagues dining after SIAM 2018
NCATS Hackathon Meeting hosts at UC San Diego, The Village 15 (Jan 2018)
Recorded Talk: Dr. Ideker speaking at AACR Annual Meeting (Chicago, IL). “Decoding patient genomes through the hierarchical pathway architecture of the cancer cell”. Watch the full AACR Webcast here.
(April 2018)
Dr. Ideker speaking at SIAM 2018
NCATS Hackathon Meeting participants at UC San Diego, enjoying the view and a winter rainbow from the 15th floor at Village West. (Jan 2018)
Recorded Talk: Dr. Ideker’s keynote talk at The Workshop on the Future of Algorithms in Biology (FAB) 2018. “Towards a structure/function simulation of a cancer cell.” Video recorded at Carnegie Mellon University. (Sept 28, 2018)
Recorded Talk from the 2018 Cell Mapping Symposium, hosted by Drs. Trey Ideker & Nevan Krogan. View all recorded talks here:
http://bit.ly/CellMapsPlaylist
CCMI investigators dinner with Ideker & Krogan labs, in La Jolla (Spring 2018)
Samson Fong & Jason Kreisberg celebrating the award of the Merck 350 Research Grant in Darmstadt, Germany. Their proposal was one of THREE applications to be funded out of more than 500 applicants.
(November 2018)
2016
Inaugural meeting of the Cancer Cell Map Initiative (CCMI) at UC San Francisco Mission Bay campus. (Sept 2016)