The following data & models have been highlighted here for ease of access: Interaction Networks, Hierarchical Cell Models, and Aging Models. Additionally, specific data sets are listed with their corresponding paper on the Publications Page.
The Ideker Laboratory has assembled and published many gene and protein interaction networks, which are available on the Network Data Exchange (NDEx) website. The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge.
Hannum G, Guinney J, Zhao L, Zhang L, Hughes G, Sadda S, Klotzle B, Bibikova M, Fan JB, Gao Y, Deconde R, Chen M, Rajapakse I, Friend S, Ideker T*, Zhang K*., Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates. Mol Cell. 2013 Jan 24;49(2):359-367. doi: 10.1016/j.molcel.2012.10.016. Epub 2012 Nov 21. [PDF] [PubMed] *Corresponding authors